Why don't you just use JPC? JPC was able to run native unmodified x86 code in Java 2 years ago. It also has the much stronger double security of the JVM and being an emulator. http://www-jpc.physics.ox.ac.uk
I assume you are too young to remember Active/X and all the problems it created.I'd rather see GWT support built into the browser providing smaller downloads and faster execution.
James, I assume you didn't read the paper. If you had, you would know they use a totally different security model, and don't assume NaCl authors are trustworthy (there isn't even a digital signature to fake).
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